By Bani K. Mallick
ISBN-10: 0470517662
ISBN-13: 9780470517666
The sphere of high-throughput genetic experimentation is evolving speedily, with the appearance of recent applied sciences and new venues for info mining. Bayesian tools play a job primary to the way forward for info and data integration within the box of Bioinformatics. This e-book is dedicated solely to Bayesian equipment of research for functions to high-throughput gene expression information, exploring the proper tools which are altering Bioinformatics. Case reports, illustrating Bayesian analyses of public gene expression facts, give you the backdrop for college students to increase analytical talents, whereas the more matured readers will locate the evaluate of complicated equipment tough and possible.
This ebook:
- Introduces the basics in Bayesian tools of study for functions to high-throughput gene expression information.
- Provides an in depth evaluation of Bayesian research and complicated subject matters for Bioinformatics, together with examples that generally element the required functions.
- Accompanied via web site that includes datasets, workouts and options.
Bayesian research of Gene Expression information deals a special advent to either Bayesian research and gene expression, geared toward graduate scholars in information, Biomedical Engineers, machine Scientists, Biostatisticians, Statistical Geneticists, Computational Biologists, utilized Mathematicians and scientific experts operating in genomics. Bioinformatics researchers from many fields will locate a lot price during this e-book.
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Additional info for Bayesian Analysis of Gene Expression Data
Example text
Xp ) are called the explanatory variables (p in number) and can be continuous or discrete or Bayesian Analysis of Gene Expression Data 2009 John Wiley & Sons, Ltd B. Mallick, D. Gold, and V. Baladandayuthapani 22 BAYESIAN ANALYSIS OF GENE EXPRESSION DATA a combination of both. For example, in typical settings discussed in this book X might represent the gene expression of p genes from a given microarray. The distribution of y given X is typically studied in the context of a set of units or experimental subjects, i = 1, .
Yn ). This is the (generalized) ridge regression estimate of Y on X with weights σ 2 −1 . Shrinkage is induced via the small diagonal elements of , which are determined by the posteriors of γ , τ 2 and λ. This variable selection framework is then extended to microarray data via an ANOVA model and its corresponding representation as a linear regression model. The two-group setting is discussed in Ishwaran and Rao (2003) and the multigroup extension is proposed in Ishwaran and Rao (2005). For purposes of illustration, we present the the two-group setting here.
Variable selection is essentially a decision problem, in which all potential models have to be considered in parallel against a criterion that ranks them. Formally, with p predictor variables we have potentially 2p models to choose from, each having q predictor variables (including the null model with q = 0). 1) with y ∼ N (Xβ, σ 2 I ), where X = (X1 , . . , Xp ), β is p × 1 vector of unknown regression coefficients, and σ 2 is an unknown positive scalar. The variable selection problem then proceeds to identify subsets of predictors with regression coefficients small enough to ignore them.
Bayesian Analysis of Gene Expression Data by Bani K. Mallick
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